More thoughts on paying undergraduates

According to the article “Building a motivated research group”, money DECREASES motivation. Maybe it is better to go with volunteers, and not pay the undergrads. :/

Several studies have shown that money decreases motivation, and one study went on to examine the brain areas that lit up during this process.

Daycare in Israel–this is from that book Freakonomics by Steven Levitt and Stephen Dubner. When the daycare instituted a late fee, MORE parents started being late. The value we place on our own behavior is more compelling than an external value placed on our behavior.

In keeping with my last post on why we should pay undergrads, the reason is for me, not them. I don’t want to look cheap! I want the undergrads to think that I value their contributions enough to go to bat for them and get them paid.

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Animals in Research, Part II

One of the papers referenced in the IASP curriculum is “Moral community and the responsibility of scientists” (Arthur Caplan, Acta Physiologia Scandinavia Suppl 1986, 128:(554)78-90). Here are my thoughts while reading this paper.

Do animals have moral rights? This is important because if so, we should treat them as human, giving them the option of not participating in an experiment. In humans this is done with “informed consent” and if you thought animal research was thoroughly regulated, human research involves even more oversights and paperwork. Of course you can’t get a signed consent form from an animal but it is feasible to set up an experiment which rewards an animal for participating in a painful experiment.

My answer to the question is, Animals have moral rights only if they have moral responsibilities. What is a moral responsibility? I’m not a philosopher, but I’ll assert it is only a moral responsibility when it goes against our nature, and when this unnatural action is for a greater-than-individual good, such as the good of our community or family. So it is unnatural to restrict our food intake but we’re probably doing that for our own benefit primarily so that doesn’t make dieting “moral” (however holier than thou we feel). But to deny ourself food so that there is enough for the children, that is moral.

Would you expect an animal to do such a thing? No. If an animal does a thing that seems moral (like starve to feed the babies) it is instinctual. (Or are we being instinctual when we think we are being moral? My opinion is no.)

Since animals don’t have moral responsibilities they don’t have moral rights.

That doesn’t mean we have carte blanche with  animal experimentation. It just means that “moral rights” isn’t a valid argument against it.

Individual Value

Some have argued for individual value. That it doesn’t work to claim that animal experimentation benefits humans, because in the process a lot of animals are harmed. (My daughter takes this point of view, in fact.) What good is it to save 10 human lives if 100 rats die? Well, most of us, particularly if we are the human whose life is being saved, would think that is a pretty fair price. But then what is the ratio? How much of a human life is a rat life worth? Is it 100 rats per human? 1000? How do you quantify something like that?

Some research isn’t going to save lives, it will improve quality of life. You could make use years of life affected, 100 lost years of rat life is worth 100 human years of improved quality of life.

Food animals are far more “wasteful” of life in this regard. Cattle live 15 years but we eat them when they are half that age. One cow serves 350 meals. (I got all these numbers from places like answers.com, so take them for what that’s worth.) At 1 meal per day, 7.5 years of cow life buys 1 year of human life.

On the other hand, that cow would never have existed if we hadn’t bred it, so maybe the 7.5 years it got to live cancel out the 7.5 years we took from it.

Back to the point, even if you are vegetarian you can’t deny that no animal would consider that a waste. Any animal that had pangs of conscience about eating another would fall to natural selection. Viruses have used billions of rats to infect millions of humans just to make more copies of their DNA. Our experiments allow other humans to make more copies of their DNA for a little while longer.

Best quote:

“The most convincing arguments against allowing researchers to conduct experiments involving animals have nothing to do with talk of ‘animal rights’ or photographs of gruesome animal experiments. The argument that the public is likely to find most persuasive against animal research is the argument that researchers are so morally arrogant that they will not deign to take their critics seriously.”

Individual value

Caplan says that we refrain from experiment on fetuses and farming the comatose for organs more out of respect for their friends and families than from the inherent value of the individual. Is this true? How would we feel about farming a comatose individual who has no friends or family? I find it objectionable; why is that? Is it because we identify with the friendless person as a person who, although friendless, COULD have been our friend or relative. “That woman could have been my mother,” we think. “That child could have been my son.” I refuse to keep a rat as a pet, because my research uses rats. If we go back to the concept that X rats = X years of human life (or quality of life), then can we calculate that X years of comatose life of a friendless human = X years of happy quality human life? “The needs of the many outweigh the needs of the one,” as Spock says, or is it “The needs of the one outweigh the needs of the many”?

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Everyone knows exercise is good for you

So why do we need to study it?

That is the response I got when I expressed an interest in studying exercise & breast cancer. I was also told “There’s no funding for exercise.”

When I’m given these sorts of answers, my reaction is generally to collect overwhelming evidence in favor of my position. There’s a good reason for this. All my opinions are thoroughly researched. If I don’t know much about a topic I do not have a strong opinion about it. So by the time I express interest in something I already know a lot about it. But knowing a lot about something doesn’t mean I can articulate it in a convincing manner. I collect references and citations for what I know and assemble them in a logical and persuasive argument.

If everyone knows exercise is good for them, why doesn’t everyone exercise? My initial thought was to overwhelm you with all the different ways exercise benefits you, and you will discover that you didn’t really know that exercise is good for you. But I haven’t done so well with making a note of the reports I come across, so I’ll try to collect that for a future post. This post contains a few examples.

Everyone knows exercise is good for us. Why do we need to study it? Everyone knows medicine is good for you. Should we not study dose, half-life, route of administration, and side effects of each and every drug? There are right ways and wrong ways to go about getting exercise. The trainers and professionals we encounter may not give good advice, partly because there’s inconsistent certification involved and partly because the studies aren’t there! I’ve discovered over the past few months that I’m good at injuring myself every time I try something new. That the advice I get is conflicting. Then look at some of the cultures built around different types of exercise, and the drugs (legal, illegal, and inadvisable) used to enhance performance.

So here are a few articles I’ve collected over the past few weeks, and I’ll continue to collect more and post summaries now and then.

Indoor cycling reduced migraines. Why should we study it any further? Migraine patients often avoid exercise. It may be a trigger. So we need to know what types of exercise are triggers and what kind is helpful. How much is helpful, how much is too much, how much is not enough. Sounds a little like dose, half-life, and route of administration!

More time spent sitting linked to higher risk of death; Risk found to be independent of physical activity level. This one’s been going around the ‘nets, at least the activity-focused corners of it that I frequent. Everyone’s like “all this exercise and it’s not doing jack??” The title is a bit misleading. Without having read the original article, here are two sentences in the Science Daily writeup that are telling: “The association remained virtually unchanged after adjusting for physical activity level” and yet “When combined with a lack of physical activity, the association was even stronger.” I’d need to read the original article to determine what was meant by physical activity level. Guidelines tend to say things like “30 minutes 3 times a week” which is practically nothing. If that was the cut-off, then I wouldn’t be at all surprised at the outcome.

More breaks from sitting are good for waistlines and hearts This is the natural answer to the previous article! In addition to “all that exercise” that you are doing, build physical activity into your day. And I can’t help but preach active transportation at this point. If walking or biking is how you get around no matter what, then on a day when you can justify skipping yoga or spinning, you still get a few minutes of walking or biking. I recall one day that I wasn’t feeling well so I “only” biked 8 miles that day. That is a ridiculously short amount of time to bike and I wouldn’t make an effort to bike 8 miles for exercise (which is not to say that it wouldn’t be an amazing accomplishment for some people, unfortunately it is not for me). But it means that even on my off days I still get 30 or 40 minutes of exercise. Instead of 30 minutes of exercise, 3 times a week, for me 30 minutes is the minimum daily exercise, and I have to make the extra effort to get an additional hour or so of exercise 3 (or 5 or 6) times a week.

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Random science bits of interest to me

It’s interesting to think about what we’re interested in, and why. (Why AM I interested in why I am interested in the things I am interested in?) My favorite general career-searching book, What Color is Your Parachute, includes an activity of determining your favorite interests. Basically you list everything you’ve ever learned about in any context, and use the prioritizing grid to narrow the long list of subjects down to the top few interests, and you should look for a career that incorporates one or more of those. But interests can change. Dull or negative experiences can kill an interest, and new interests can spark up unpredictably. During my undergraduate years I found it fascinating to watch my own interests morph. Usually the interest was driven by an exceptional teacher. Sometimes it was sparked by a personal experience.

I’m on some LinkedIn list where I get an email listing 10 or so headlines from Science Daily. Based on the headline, I typically find 2 or 3 I’m interested enough to click on, and often I link those to facebook. The ones I find interesting enough to share are widely varied. This is a log of some of these interests, and when possible I’ll annotate with what drove that interest.

Novel Memory-Enhancing Mechanism in Brain ScienceDaily (2010-12-15) — Researchers have identified a novel mechanism in the brain that boosts memory. Scientists found that a small protein called neuropeptide S can strengthen and prolong memories of everything from negative events to simple objects. I’m interested in this one because of its link to PTSD.

NASA helps create a more silent night ScienceDaily (2010-12-15) — The holidays are here and the nation’s airports are busier than ever — thousands of airplanes taking off and landing. Passengers and people living around airports are reminded that the airplane is not the quietest mode of transportation; certainly not as quiet as a sleigh pulled by eight tiny reindeer. Harder to say why this one caught my eye. I like it when NASA research is applicable to life on earth.

‘Breathalyzers’ May Be Useful for Medical Diagnostics ScienceDaily (2010-12-29) — Researchers have overcome a fundamental obstacle in developing breath-analysis technology to rapidly diagnose patients by detecting chemical compounds called “biomarkers” in a person’s respiration in real time. I love hearing about non-invasive diagnostic and therapeutic tools. They will revolutionize medicine, and it’s so star-trekky!

Fueling the body on fat: Critical tuning dial for controlling energy found ScienceDaily (2011-01-04) — Researchers have found what appears to be a critical tuning dial for controlling whole body energy. When energy levels within cells drop, it sets off a series of events designed to increase the amount of calorie-rich dietary fat that the body will absorb. I’m fascinated by what our bodies are “supposed” to do, or “designed” to do, compared to the lifestyle we actually lead.

Motion sickness reality in virtual world, too ScienceDaily (2010-12-21) — Psychologists see motion sickness as potential fallout from high-end technology that once was limited to the commercial marketplace moving to consumer use in gaming devices. As someone who suffers mildly from motion sickness, this is mildly of interest to me, and I love it when technology helps us out. Instead of hurts us.

Strange new twist: Researchers discover Möbius symmetry in metamaterials ScienceDaily (2010-12-21) — Researchers have discovered Möbius symmetry in metamaterials — materials engineered from artificial “atoms” and “molecules.” This phenomenon, never observed in natural materials, could open new avenues for unique applications in quantum electronics and optics. A natural Mobius! We invent things like the perfect circle or the fibonacci sequence and then we find them in nature, over and over. The latent mathematician in me gets turned on by this stuff.

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Faith of a scientist

This post isn’t about religion. I’d love to put the science-religion war to rest, and Francis Collins is one of my heroes for doing just that. Yes, Virginia, it is possible to have religious faith AND be a scientist. But that is not my topic today.

This is about the amazing faith that researchers have in trying the experiments over and over, always having hope that it WILL work one day. Trouble shooting “maybe it’s the antibody”, testing the antibody, finding out that yeah, the antibody is bad, ordering a new antibody and trying again. “This time it will work, the problem all along was the antibody had gone bad.” And then it doesn’t work, and yet instead of giving up in despair, you now think, “Ok, so the antibody was bad, but that wasn’t the only problem.” A common complaint is “I wasted months on a bad antibody.” Yes, they complain, but–they were willing to spend months on this experiment. And they haven’t given up yet.

The computer game, Sid Meier’s Civilization IV, features Leonard Nimoy reading quotes each time a new technology is discovered. Sid Meier’s Alpha Centauri continued this, but used “futuristic”, or fictional, quotes. The following quote is from the futuristic leader Academician Prokhor Zakharov at University Commencement.

The popular stereotype of the researcher is that of a skeptic and a pessimist. Nothing could be further from the truth! Scientists must be optimists at heart, in order to block out the incessant chorus of those who say “It cannot be done.” Sound file: fac10

The fictional leader has it right except for his opinion of WHY scientists are optimists at heart. It is not to block the chorus of naysayers. It is to block our own good sense that tells us it is time to give it a rest.

In the Postdoc Forums’ post “Successful Scientist Qualities“, interviewees “shared the belief that tenacity, perseverance, resiliency or remaining motivated in the face of experimental failures is at the top of the list.” These are the same qualities that drive us nuts in the creationists.

What’s a bit ironic to me is that many consider me a pessimist. I consider myself a realist.

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Review of “The disposable academic”

The disposable academic: why doing a PhD is often a waste of time

I reign in my own negativity about getting a PhD. This article from the Economist (Dec 16, 2010) is even more negative. The bulk of the article is the usual, pointing out the supply-and-demand problem, points the finger of blame at universities and professors who benefit from cheap grad student & postdoc labor, and acknowledges (but doesn’t blame) the graduate students who admit that they decided to get a PhD because they didn’t know what else to do.

I find it comforting that others feel more negatively about PhD programs than I do. The author comes across as discouraging anyone from getting a PhD. I get the feeling that the word “often” was inserted into the title by an editor and against the wishes of the author. I almost, but not quite, agree. There is one good reason to get a PhD, and that is because you know of a specific job that you want to have, and you need a PhD to get that job. Preferably, the employer has already hired you & is sending you to grad school to get your PhD so you can do that job! (I know someone who did that.)

From the article: “Academics tend to regard asking whether a PhD is worthwhile as analogous to wondering whether there is too much art or culture in the world.” The author goes on to say this might be true but doesn’t mean the PhD is good for the individual (distinguishing the good of the many from the good of the few). I will go out on a limb and disagree with the premise that it is not possible to have too much knowledge, art or culture in the world.

It’s often said that if all the musicians were killed, that there would still be music, because the silent or inferior musicians would suddenly be the most talented musicians, and those without any musical ability would discover they have average musical ability. I agree with this, my husband has no musical ability at all but still gets requests for the lullaby he sang to our daughter when she was young. When I first heard him sing it, I couldn’t tell what the melody was supposed to be. Yet I love to hear him sing it now. So, I could agree with the statement that it is not possible to have too little music in the world. Not because I don’t love music, but because it simply isn’t possible. You can keep taking away the music and we will keep producing it, we have an endless supply.

Let’s assume that to be true of art, culture and knowledge, at least under the condition that the internet exists.

But too much? Is it possible to have too much music, art, culture and knowledge? I argue YES. Art & culture become commonplace won’t be valued. As far as knowledge, we’ve already achieved too much. That is not to say that we have discovered all that is worth discovering, we have learned all that is there to learn, of course we haven’t and there is much more to be learned and to discover. And yet we have achieved too much knowledge, in that too many people know too much.

“Workers with “surplus schooling”—more education than a job requires—are likely to be less satisfied, less productive and more likely to say they are going to leave their jobs.” Although this statement isn’t referenced, let’s assume that the author really did read a study somewhere and intended to cite it. We need workers to do jobs that don’t require a lot of education. If the workforce is full of overeducated workers, then we have too much knowledge. Those workers resent the time they wasted acquiring knowledge that they don’t use or share. They’re not doing their job as well as they would if they hadn’t acquired that knowledge.

Every time someone regrets their PhD is an instance of too much knowledge in the world. I don’t want knowledge to become an ivory tower for the elite few, inaccessible to the common man. I want knowledge to be freely available for the taking. The difference is, people enter into an arduous PhD program on a whim, and regret it, while we don’t generally regret the time spent browsing a topic or researching a specific question.

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Animals in Research, Part I

The International Association for the Study of Pain (IASP) published a curriculum which is basically like the table of contents of a textbook plus a lot of references. One can read all the references cited and should be able to learn the objectives listed in the curriculum. Half of the chapter about Animal Models of Pain is about ethics. I was tempted to skip through it. I’m an ethical person, right? I know how the rats should be treated. But I wanted to be thorough.

I’m glad I did. First, I learned some important things about pain from one of the references. Second, it’s a deep topic and has given me a lot to think about.

What the public really needs to know about animal research is that there are stringent rules and lots of paperwork in place regulating it. I don’t recall my impressions when I learned all this as a new graduate student. I have observed undergraduates’ reactions as they, new to research, encountered the regulatory agencies and went through the training, and friends as I mention the paperwork involved. “I thought scientists could do whatever they wanted,” is common.

Before we can do an experiment on a single animal, everyone who will have anything to do with the animal must go through training. At ATSU, this is a generic video that could be used at any institution, and the director of the animal facility talks to the trainee about how we do things here.

An animal protocol describing everything that will be done to the animals, how many animals will be used, and many, many details must be filed and approved with the Institutional Animal Care and Use Committee (IACUC). The IACUC is made up of stakeholders within the university as well as outside, and includes one layperson. So the protocol must be written such that the layperson can understand the purpose of the research and the reason why animals must be used–not too much scientific jargon, in other words. You would be able to understand the IACUC protocols that I have written.

In this protocol the investigator must justify why animals have to be used and provide evidence of a literature search of at least 2 databases showing that there are no alternatives. We must justify the species & strain we have chosen, and the numbers of animals. We can’t just ask for 100 rats and say “I think I’ll only use 60, but I want to ask for 100 in case something goes wrong.” We have to specify what might go wrong and why we’d need another 40. (I typically request 10% more in case of unexpected death of an animal– although I have NEVER had 10% of my animals drop dead inexplicably! In fact it’s at most 2 or 3 rats a YEAR found dead, and I am almost always able to figure out why.)

Protocol approval is no rubber-stamp process. The veterinarian typically requests many changes and clarifications. It takes at least a month, up to a few months, to get approval.

Oh, all your animal care workers better be registered with Occupational Health and Safety Program. That’s not for the animals, on the surface it seems like it’s for the worker, but I think it’s actually to protect the institution from being sued by a worker. Working with rats, it is not a huge concern, the issue with rats is allergies and rat bites.

Approved protocol, trained personnel, finally we get to order some animals in. Once the rats arrive, the animal facility personnel put them in clean cages with food and water. Every day, including weekends & holidays, one of them visually inspects every single animal, and records the humidity and temperature of the room. I can do this as well if I like, but they have to inspect even if I already did that day. They make sure every cage has food and water and is clean. (Sometimes a water bottle leaks, for example.) If an animal appears sick, they notify the investigator and/or the veterinarian. Twice a year facility is swiped and bacterial cultures are grown to assess the cleanliness.

In some facilities, a “sentinel” animal is housed in the same room for a few weeks and then sent off for necropsy & pathology to check for infection. If one rat in the room is infected, every rat in that room has it. The animal facility at ATSU is relatively small and we don’t keep sentinels.

This is all standard to me, but people are usually somewhat surprised by how extensive these regulations are. I feel more than a small amount of pride in how well research animals are cared for. I know that food animals, the kind that end up in the grocery store (not the kind that come to the Farmer’s Market) aren’t treated nearly as well, which is scary since I’m going to be putting these things in my mouth! I’d almost rather eat rat-on-a-stick than supermarket chicken.

Stay tuned for further installments on this topic.

These lucky rats have running wheels. Rats LOVE to run!

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What separates man from beast?

I was reading National Geographic in a doctor’s office recently, an article about Jane Goodall. Her work rocked 1960’s scientists because she saw chimps using tools. At the time there were several criteria thought to separate humans from animals, and tool using was one of them.

Since then many of the others have been put to rest too. Perhaps there is still a definition, other than the species definition, that works, but I have to wonder what is the point? Why do we need to feel that something sets us apart? We are much more like animals than we pretend we are, and animals are much more clever, intelligent, creative, and emotional than we pretend they are.

The most you can say is that we are one end of a continuum. There is no denying that however stupid and destructive we can be, we are the most intelligent, we have the greatest capacity for construction and destruction of any creature on the planet. If you place humans at the extreme right end of the continuum, the next creature to the left of us isn’t so far away at all.

I think you could with confidence come up with criteria that set humans apart from sponges, nematodes, or fruit flies. But I don’t recommend trying for much higher than that. Our rationality, our creativity, our emotions evolved not so long ago (evolutionarily speaking). It would take longer than that to put more distance between us and the chimps, elephants and dolphins, and by then there would be something else in between.

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Books for scientists

One of the non profit groups I volunteer for is assembling a recommended reading list for postdocs, and I contributed a few titles. These are all applicable to a broader range of scientists than postdocs.

Making the Right Moves, available for free. Information, what to expect, and advice for early career investigators from grad student through junior faculty level.

Advice for New Faculty Members by Richard Boice. I recommend this for postdocs whether they are considering a faculty position or other. It has great advice on writing and on career socializing, and on teaching for those who might be doing that.

Intuition by Allegra Goodman. This is a novel about research misconduct. It would be a good discussion point for an RCR class. It is entertaining and thought provoking, and reading it will help you understand the consequences of some difficult decisions you will face, such as dating someone in your lab or what to do with your suspicion of someone’s misconduct.

Moo by Jane Smiley. This is a novel about Moo University, a fictional midwest university that seems eerily familiar to anyone in any midwest university! It’s a great stress relief, but also educational in understanding the vagaries of politics in academia.

PHD Comics (the books or the web comic). While PHD Comics started with grad students, postdocs make several appearances and Mike Slackernerny’s recent transition to a postdoc position puts postdocs on the stage. Whether you are a grad student or a postdoc, PHD Comics provides a humorous perspective but also enlightens us that the frustrating quirks of our PIs are uncomfortably common.

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Dabbling

Scientific Career Renewal by Peter Fiske

Peter Fiske’s article “Scientific Career Renewal” talks about the benefits of dipping into new areas. Doing so will generate new ideas (in the overused cliche, think outside the box), and renew your enthusiasm, or if you prefer, passion, for your career, or for research, or for science. This article startled me because I had recently come across the same idea twice before.

Iain received the biography of Grace Hopper as a graduation gift from his professors. In her first career as a math professor, the young Dr. Hopper audited many classes at her university, in many fields. Chemistry, anthropology, literature, biology, everything. These were useful later in life when her career took an unexpected turn into the creation of the new field of computer science. Chemistry helped her understand the electronics of the Mark I, for example. Of course when she was auditing these classes she had no idea that any of them would ever be useful. She just wanted to learn things.

I forget the other place I read this notion, it was an article or a blog about the computer language Ruby, or maybe Rails. (Iain’s been learning about these.) The author mentioned how he liked to learn something new, often a new computer language, over his winter breaks when he was in college, and how this led to the skill of being able to pick up new languages very quickly, among other things.

I often feel a little guilty about how much time I spend learning about bicycling, bicycle advocacy, politics of cycling, exercise, the politics of exercise, and so on. These topics are just a hobby, they aren’t something that furthers my goals for either work or family. They happen to be what I’m interested in and I couldn’t stop thinking and learning about them if I tried. These 3 examples validate the time I spend on these. Who knows, maybe they will feed into my career, and who cares if it is my actual career or if it remains a hobby. Perhaps my more important accomplishments in my life will be through my hobby rather than career.

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